Computer Science Grader Assistant
Computer Science Grader Assistant is a software to help teachers and graders in grading computer science assignments that has to be compiled and executed. It p
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Science Lab Inventory Order Management
Science Laboratory Inventory and Orders Management System: suitable for school's science laboratories to manage stored items (chemical and equipment) and a
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Catania Science Gateway Framework
Audience: Science/Research, Education, Developers, Testers. User interface: Web-based. Programming Language: JavaScript, JSP, Java. Categories: Scientific/Engi
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LSID (Life Science Identifier)
Life Science Identifier (LSID) resolution protocol, to locate biologically significant data over a network, within middle-ware providing a client A.P.I. for Li
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Tree of Computer Science
A set of data for computer science history (languages, OS, Distro, etc.) and tools. Audience: Education, System Administrators. Categories: Database, Library,
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AWESOME DATA SCIENCE
An open source Data Science repository to learn and apply towards solving real world problems. This is a shortcut path to start studying Data Science. Just fol
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The Earth Science Markup Language
ESML is an interchange technology that utilizes external metadata to allow applications to plug and play seamlessly with Earth Science specific datasets in het
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Political Science: Campaign Simulator
The Campaign Simulator is an attempt to statistically model and predict the outcome of an American presidential election; several users assume the roles of com
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Scientia - The science database
The idea of Scientia is to have a place where scripts, info etc can be downloaded for free. Books are expensive and lots of good information is spread all over
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Life Science Identifier (LSID) Spec
Life Science Identifier (LSID) Specification is a globally unique identifying scheme for information resources on the life sciences domain. It is based on Inte
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Computer Science Tutorials
This is a collection of tutorial projects that are used by my computer science students to learn the ins and outs of software design and development. The prima
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Applied Science
This is the work of Tim Hill (lead programmer) and Lashan Dias (lead artist). Audience: Developers, End Users/Desktop. Programming Language: C#. Categories: Si
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Social Science Measurement
This project aims to develop open source psychometric data analysis software, including estimation software for Rasch and Item Response Theory (IRT) models for
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JSci - A science API for Java
JSci is a set of open source Java packages. The aim is to encapsulate scientific methods/principles in the most natural way possible. As such they should great
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ITB Computer Science Code
Institute of Technology, Blanchardstown Computer Science code by the class of 2007-2011 on course BN104. In this project we are open sourcing all of our projec
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Science Olympiad Scoring System
This is an Excel based scoring system for use at Science Olympiad tournaments. Versions have been in use since 2002 at tournaments all over the country. It is
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PSLab Android App
Repository for the PSLab Android App for performing experiments with the Pocket Science Lab open-hardware platform. This repository holds the Android App for p
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genome
This project provides visual interactive interfaces to custom algorithms used in genomes research. Audience: Developers, Education, Science/Research. User inte
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TreQ
TreQ aims at mapping reads from next generation sequencing (NGS) data to a reference genome, with emphasis on accuracy in the presence of structural variations
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PocketAnalyzerPCA
PocketAnalyzerPCA combines a geometric algorithm for detecting pockets in proteins with Principal Component Analysis and clustering. This enables visualization
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PyBact
PyBact is an open source software written in Python for Bacterial Identification. The software generates simulated data matrix which accurately represents the
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BioNLP-Corpora
BioNLP-Corpora is a repository of biomedically and linguistically annotated corpora and biomedical data sources. There are many resources available in separate
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ProTag
ProTag integrates biological web services and online databases seamlessly into the Microsoft Office applications Word, Excel and PowerPoint. It is extensible a
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bruread
bruread is a program to read and display NMR data in the Bruker XWIN-NMR format. The program has a command-line interface and a graphic display based on gnuplo
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WSciParser
WSciParser (Web Science Parser) is a handy small library created in C#.NET to parse data from web science databases (ISI Web, NCBI, PubMed.). Features: Full ex
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openSputnik
openSputnik is a robust distributed platform for massive scale precalculation of genetic and genomic data using contemporary bioinformatics methods. Annotated
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OTforge
OpenTopography facilitates community access to high-resolution, Earth science-oriented, lidar topography data, & related tools. OTforge serves as our open
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DEEP
The Differential Evolution, introduced in 1995 by Storn and Price, considers the population, that is divided into branches, one per computational node. The Dif
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papco
PaPCo is modular IDL software for the analysis, distribution and display of science data products. Primarily used by the space science community but in princip
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TraceViewer
TraceViewer provides several functionalities needed by any biologist who wants to efficiently analyse his/her trace data. Audience: Education, Healthcare Indus
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Turkish Human Mutation Database
The rapid accumulation of human mutation data has led to the idea of establishing a national/ethnic database in Turkey endorsed by HUGO-MDI/HGVS. The interdisc
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BYU EDIF Tools
An API for manipulating EDIF netlists in Java. We use this API to analyze netlists as a part of our FPGA reliability project. We intend to keep the API as gene
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BibGlimpse MEDLINE Retriever
Literature management tools typically require that bibliography is typed in by hand for each PDF reprint added. The BibGlimpse retriever presented here can aut
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composight
Composight is a cross-platform toolkit for 3D-image processing in the domain of composite materials science. It is written in C++ and provides small, problem-s
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S4PM
The Simple, Scalable, Script-based Science Processor for Measurements (S4PM) is a system for highly automated processing of science data, scalable up to large
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dupost
A coupled dual porosity Stokes model implemented with FEniCS. References: 1. C. Douglas, X. Hu, B. Bai, X. He, M. Wei and J. Hou, "A Data Assimilation Enab
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SPADE
The Structural Proteomics Application Development Environment is a Python tool kit for developing and deploying bioinformatics applications. Handles graphics,
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DDMaker
DDMaker perform local density analysis and generates pseudocolor maps of the spatial distribution of imaged cellular structures in 2D images, starting from eit
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SeaBreeze
SeaBreeze is a device driver library that provides an interface to select Ocean Optics spectrometers. It is written in C/C++ and builds and runs on Windows (XP
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Chemistry Calculator
Solve equations, view charts and graphs, make conversions, balance equations and more. Chemistry Calculator. Audience: Healthcare Industry, Science/Research, E
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Evrika
Evrika is a science simulator and advanced calculator, which is based on modules. Modules are libraries containing definitions of concepts that can be used in
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PPICompare
PPICompare detects statistically significant rewiring events in protein-protein interaction networks - even if they are caused by alternative splicing - and re
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sciNote
sciNote is an open source electronic lab notebook (ELN) that helps you manage your laboratory work and stores all your experimental data in one place. sciNote
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SpectralWorks
Program for viewing, editing, manipulating, and analyzing absorbance spectra. Simple arithnetic includes making linear combinatins of up to 10 spectra. Advance
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PPIXpress
Although protein-protein interaction networks are an ubiquitous component of modern systems biology, comparatively few efforts have been made to tailor their t
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OpenCFU
OpenCFU is a completely open source lightweight application designed to enumerate clustered circular objects such as bacterial colonies. It can handle digital
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Phobos Application
Phobos is to be used for recording rodents' behavior during the thigmotaxis (open-field) and the elevated plus-maze tests. Phobos provides the possibility
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CT4AM
CT4AM is a cross-platform toolkit for 3D-image processing in the domain of additive manufacturing for toolpath visualisation or correlation to tomographic data
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Tree Visualisation with Visual Cues
This project extends a previous work on node link tree visualisation and interaction by providing visual clues on hidden structures. We adopt DOITree from Pref
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Avogadro
Avogadro is an advanced molecular editor designed for cross-platform use in computational chemistry, molecular modeling, bioinformatics, materials science and
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OpenSIMPLY
OpenSIMPLY is an open source project for simulation modeling in Delphi, Lazarus, Free Pascal. Download OpenSIMPLY at opensimply.org The project is free compute
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pythia
Pythia is a thermodynamically based PCR primer design program. Audience: Science/Research. Programming Language: C, Python. Categories: Bio-Informatics, Molecu
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CUBS
Chicago Utilities for Bioinformatic Science. Audience: Science/Research, End Users/Desktop. User interface: Web-based. Categories: Bio-Informatics
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CDKTools
The Octet-CDK interoperability package. Audience: Developers, Education, Science/Research. Programming Language: Java. Categories: Bio-Informatics, Chemistry,
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TabuVis
TabuVis is a comprehensive visual analysis tool that provides a flexible, customizable and interactive visualization for tabular (or multidimensional) data. It
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RAM
The aim of this project is to realize an implementation of a Random Access Machine (which is a common tool in theory of computer science). Audience: Education,
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XGBoost
XGBoost is an optimized distributed gradient boosting library, designed to be scalable, flexible, portable and highly efficient. It supports regression, classi
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DataShot
Applications to support the efficient capture of data from natural science collections specimens (particularly entomological collections), by facilitating pre-
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pHp
close. Audience: Healthcare Industry, Science/Research, Education, Developers. User interface: Web-based. Programming Language: PHP. Categories: Communications
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Sit_to_Stand_Categorization
Audience: Healthcare Industry, Science/Research, Engineering. Categories: Medical Science Apps.
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iMol
sdf file viewer. Audience: Science/Research. User interface: OpenGL, wxWidgets. Programming Language: C++. Categories: Molecular Science, Chemistry
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3D HIV
A project to create an interactive, scientifically-accurate 3D model of the HIV virus. Particularly intended for use in education. Audience: Education, Science
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Pgenesniffer
This tool will allow individuals to find and quantify the overlap of variants with pseudogenic sequences. Audience: Science/Research. Programming Language: S/R
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EvalMSA
Audience: Science/Research, End Users/Desktop. User interface: Console/Terminal. Programming Language: Perl. Categories: Molecular Science, Bio-Informatics
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VariScan
VariScan is a software package for the analysis of DNA sequence polymorphisms at the whole genome scale. Audience: Science/Research. User interface: Command-li
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Leo toolbox
Audience: Science/Research. User interface: Other toolkit. Programming Language: MATLAB. Categories: Medical Science Apps.
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Gen3D
Gen3D is an application designed to determine three-dimensional genome and chromosome models. It uses chromosomal contact data to construct three-dimensional c
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TauFactor
Please contact the author at [email protected] for any questions or if you wish to cite this application in a academic study. Journal paper available here
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Nanoneer
A nano cad program used to model nanotechnologies and maybe in later versions simulate the models. Audience: Science/Research. User interface: .NET/Mono. Progr
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JMolDraw
2-D chemical structure drawing program. Audience: Science/Research. User interface: Java Swing. Programming Language: Java. Categories: Molecular Science, Chem
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rfxplot
RFXPLOT is a versatile toolbox for data visualization for random effects (RFX) analyses in SPM. Audience: End Users/Desktop, Science/Research. Programming Lang
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cnsFace
cnsFace is a GUI for the Crystallography and NMR System. Audience: End Users/Desktop, Science/Research. User interface: wxWidgets. Programming Language: Python
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Gadgetron
Medical Image Reconstruction Framework. Audience: Healthcare Industry, Science/Research, Advanced End Users, Developers. Programming Language: Python, C++. Cat
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Moleculizer
Moleculizer is a tool for simulating and generating biochemical reaction networks that are specified through a set of rules for protein-protein interactions. A
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Xpose
Xpose - an S/R based population PK/PD model building aid for NONMEM. Audience: Science/Research. User interface: Console/Terminal. Programming Language: S/R. C
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TheCounter
TheCounter was designed as a helping hand for people who need to count specifically labeled cells in histochemically or immunohistochemically stained tissue sa
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sibRNAfold
The sibRNAfold program is a modification of the Vienna RNAfold program for RNA secondary structure prediction through energy minimization. Audience: Education,
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RCFPD
An R package for distribution of data analysis functionality used by the Proteomics Core at Weill Cornell Medical College in Qatar. Audience: Science/Research,
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ABIFManager
Audience: Science/Research, Education. Programming Language: Visual Basic .NET. Categories: Molecular Science
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RadLex
Tools designed to assist in creating and using the RadLex ontology (http: //www.radlex.org). Audience: Education, Healthcare Industry, Science/Research. Progra
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Vimes
Vimes: Visual interface to materials simulations - An open source, python/Open GL interface to molecular and materials simulation programs. Audience: Science/R
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SrsUrlApi
A Perl client library to access Sequence Retrieval System (SRS) servers using the REST/CGI API provided by SRS. Audience: Science/Research, Developers. Program
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Octet
Octet is an object-oriented molecular representation framework written in Java. Audience: Developers, Education, Science/Research. User interface: Web-based, W
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DissoKin
Audience: Non-Profit Organizations, Government, Healthcare Industry, Science/Research, Advanced End Users. User interface: Win32 (MS Windows). Programming Lang
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Janocchio
Janocchio is an application or applet for viewing 3D molecular structures and calculating NMR couplings and NOEs. Audience: Science/Research. User interface: J
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fiswidgets
Graphical Desktop for running workflows (processing pipelines) for neuroimaging analysis. Audience: Developers, Science/Research. User interface: Java Swing. P
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SigViewer
SigViewer is a viewer for biosignals such as EEG, EMG, and ECG. SigViewer supports various file formats. Besides viewing biosignals, SigViewer can also create
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vbFRET
This is a Matlab software package for single molecule FRET data analysis. Audience: Engineering, Science/Research. Programming Language: MATLAB. Categories: Bi
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lrrr
Extraction of binding sites of ligands and search for unknown binding sites on apoproteins. Some call it docking. Some call it binding site detections. Some ca
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hustthesis
HUST Thesis (hustthesis) is a project initiated by graduate students of Huazhong Univ. of Science and Technology (HUST), China to deliver a LaTeX template for
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matNMR
MatNMR is a highly flexible toolbox for processing 1D and 2D NMR/EPR spectra in MATLAB and creating high-quality 1D, 2D or 3D plots. Fully GUI and/or script-ba
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PowerMath CAS
PowerMath is a computer algebra system designed for all science. It has the ability, but not the limitation, to complete advanced or simple science and math pr
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ED Software
ED Software project contains several programs used (mostly) for processing gas-phase electron diffraction (GED) experimental data. Audience: Science/Research.
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libamtrack
A library contaning amorphous track based algorithms and auxiliary routines for the prediction of detector response and radiobiological cross-sections in heavy
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FMR Eyetrack
FMR Eyetrack is a SPM plugin that allows to directly estimate the point of gaze from the functional MRI data without the help of a dedicated eye tracker. I am
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VTVH
Program for the simulation and fitting variable temperature - variable field MCD spectra. Can specify spin=1/2,1,.5/2 and coupled spin systems. Audience: Scien
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SynBioLib
SynBioLib -- your toolkit for synthetic biology applications. SynBioLib aims to establish a platform on which the Synthetic Biology community can develop and s
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Disco
Disco (DIStribution of COnformations) is a software package for the estimation of solution conformations of organic molecules. It is rewritten form of NAMFIS m
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Animal Imaging
"animal-imaging" is a project to collect and disseminate information on imaging technologies (e.g. CT, MRI, PET, ultrasound) pertinent to the vivo imag
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Vet+
Vet+ Is currently being renewed. Downloading is not recommended until further notice. Audience: Healthcare Industry, Science/Research. User interface: Web-base
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Color Deconvolution for TMA images
This is a collection of ImageJ macros (scripts) for performing color deconvolution and analysis of immunohistochemistry (IHC) staining on tissue microarray (TM
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SimCell.net
This SimCell.net project is an independent port of the SimCell java app. The goal for this effort is to model molecular self assembly (cell membranes and other
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PiViTi
This pharmacovigilance web application permits you to process a query on the Adverse Event Reporting System (AERS) data which is published by the U.S. Food and
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FluoroCorrect
FluoroCorrect is a Matlab-based, open source software package designed for correcting image deformations introduced by X-ray image intensifiers in fluoroscopy
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oscilib
Oscilib (Open Science Library) aims to be a comprehensive suite of programs that provide a simple useful way to solve common scientific and mathematical proble
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MERRYts
MERRYts is the Most Efficient Reader for Representing Your Terminology System. One GUI for all (medical) Terminology Systems. Audience: Information Technology,
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HAPMIXMAP
A program to model HapMap haplotypes in genetic association studies using tag SNP genotypes. Please visit http: //www.ucd.ie/genepi/hapmixmap for more details.
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gfit
gfit creates an interface between computational models and experimental data and provides tools for their analysis. Audience: Developers, Education, Science/Re
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Veterinary/VMDB HL7 library
The Veterinary VMDB HL7 Library Project. Audience: Healthcare Industry, Science/Research. Programming Language: C++, Java. Categories: Medical Science Apps.
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IVuPy
IVuPy is a set of Python bindings for the Coin3D C++ class libraries which serve to create software for 3D visualization in science and engineering. IVuPy aims
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SARSE
SARSE is a scientific data editor that uses the extendable column format, allows interactive overview, tracks editing history, and has a user extendable tool b
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Autoencoders
This is the source code for my 11th grade science fair project. It involves the use of autoencoders to improve error rates with small amounts of labeled data b
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XStar
A Collection of STAR/CIF processing libraries and related tools, including sub-projects: AStar, TEStar and others. Audience: Advanced End Users, Developers, Sc
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PySpline
PySpline is a graphical, cross-platform program for processing X-ray absorption spectroscopy (XAS) and Extended X-ray absorption fine structure (EXAFS) data. I
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BioCSharp
BioCSharp is an open-source project designed to provide a bioinformatics .NET framework for processing biological data. It will include objects for manipulatin
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NullAllEst
NullAllEst is the implementation of a maximum likelihood algorithm to estimate the frequency of a null allele in microsatellite genetic data. A Markov Chain Mo
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OSGMM
OSGMM, the Open Science Grid Match Maker, is a match maker which sits on top of the OSG Client software stack. It gets site information from ReSS and uses a fe
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PyMOlyze
PyMOlyze is a graphical program to analyze the results of quantum chemistry (HF/DFT) calculations. Features include various population analyses, fragment analy
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NAMD Log Parser
NAMD Log Parser sorts through the log file generated by NAMD and extracts energy information to export to a graphing program or used in the basic graph provide
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libcfp
A Library for Chemical Formula Parsing. Syntax only, no semantics. No external library dependencies, namespace std: : only. Uses UnitTest++ during development
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Hanalyzer
The Hanalyzer is a tool designed to help biologists explain results observed in genome-scale experiments and to generate new hypotheses. It combines informatio
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mapstedi
The University of Colorado Museum (UCM), Denver Museum of Nature and Science (DMNS), and Denver Botanic Gardens (DBG) are collaborating to convert their separa
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IterMap
Contains various algorithms that maps short reads produced from Illumina (Solexa) Genome Analyzer, or Applied Biosystems' SOLiD System, to a reference sequ
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The Soccer Theory
2D soccer simulation focussing the theoretical covering strategies of the game. Academic research tool based on computational geometry science. Audience: Scien
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PGAPy
pgapack, the parallel genetic algorithm library is a powerfull genetic algorithm library by D. Levine, Mathematics and Computer Science Division Argonne Nation
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PyTuneSounds
PyTuneSounds is a application that lets the user tune the volumes of sounds in a variety of ways, e.g. to use these in psychoacoustic experiments. It is possib
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Tahoe
Tahoe is a research-oriented platform for the development of numerical methods and models for the simulation of complex material behavior. Audience: Science/Re
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FociCounter
FociCounter is a simple and user-friendly program for analysis of gamma-H2AX foci. It allows to determine the number of foci in a single cell, a foci intensity
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PASSIM
The Patient and Sample System for Information Management (PASSIM) is a system for annotation and storage of data, associated with the collection of samples in
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jadab
Not yet playable. jadab is a Dots and Boxes playing program. It uses modern algorithms and graph theory to play the twin game, Strings and Coins. It is being d
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Gvib
GVIB is a user friendly package for vibrational analysis. Given a molecular geometry, it will calculate vibrational frequencies and intensities using anharmoni
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x2fasta
A collection of tools to transform common biosequence formats (e.g. EMBL, SWISS-PROT, UniProtKB, GenBank and RefSeq) into the fasta sequence format. Audience:
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medSLT
medSLT - The Medical Speech Translator. Audience: Information Technology, Science/Research, Education, End Users/Desktop. Programming Language: Prolog, C, Java
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DRCS
DRCS (Dimensionless Reaction Coordinate Software) calculates a dimensionless reaction coordinate for chemical reactions that can be used to classify transition
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BioQuery
BioQuery is a bioinformatics tool that acts as a query builder for genetic, protein, publication, and other biomedical databases. BioQuery is also an update se
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ADMIXMAP
A program to model admixture using marker genotype data. Please visit http: //homepages.ed.ac.uk/pmckeigu/admixmap/index.html for more information. Audience: S
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Comparative Genomics Vocabulary
The Comparative Genomics Vocabulary (CGV) is a SKOS representation of comparative genomics containing terms, text definitions and synonyms of the domain. The v
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KESM Stack Processor
This program is designed to create usable RAW 3D data volumes from images produced using Knife-Edge Scanning Microscopy. Audience: Science/Research. Categories
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SynapticSimulator
The Synaptic Simulator is a program which simulates models of single neuronal synapses and compartments, complex constructs of such models. Furthermore the pro
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BioEra
BioEra is DSP visual designer that can be used to create interfaces between human being and a machine with using bio signals like EEG, QEEG, HEG, EMG, ECG, GSR
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runsbml
runsbml - Pathway Simulation Tool emulates the dynamics of biological pathways by calculating concentrations of biochemical compounds at different times and co
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Data Collaboration
Framework for uncertainty propagation in predictive models targeted for collaborative science. Audience: Science/Research. User interface: Command-line, Win32
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dwi-toolbox
The dwi-toolbox provides a set of free and open-source Matlab routines for the simulation and analysis of Diffusion-Weighted Magnetic Resonance Imaging data. I
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FacScan
FacScan is a predicting tool of transcription factor binding sites. FacScan scans multiple DNA sequences, e.g. from microarray experiments, for potential bindi
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MindIO
This project will develop cross-platform Java software for interfacing with EEG devices, specifically hardware developed by the OpenEEG project (http: //openee
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f.r.e.e.
The Flexible Registration and Evaluation Engine (f.r.e.e.) allows the composition, evaluation and optimization of image processing/registration algorithms. It
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LineageEvolver
LineageEvolver is a simulation system for molecular evolution. Sequence evolution is simulated using modular processes such as substitutions, gene duplication/
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Blox
The purpose of the project is to develop a quantitative medical imaging & visualization program for use on brain MR, DTI and MRS data. It is a joint projec
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CUAHSI openHIS
CUAHSI OpenHIS: Open Hydrological Information System is sponsored by National Science Foundation to develop infrastructure and services for the advancement of
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PyExPsiN
PyExPsiN is a Python crossplatform (Linux/Windows) module for made easy writing psychological experiments. Right now includes functions for DMTS (Delayed Match
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SimpleJ
SimpleJ is a collection of easy to use multi-purpose Java beans. They provide commonly used methods for handling I/O, arithmetic, and general commonly used alg
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2D HF
This is an extension to the standard 2D HF package (A Numerical Hartree-Fock Program for Diatomic Molecules by Jacek Kobus, Leif Laaksonen and Dage Sundholm) t
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Parentheses Classifier
The Parenthesis Classifier takes the contents of a set of parentheses and classifies it into one of several categories. It includes a parenthesized-data extrac
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SpacePy
Now maintained at github.com/spacepy/spacepy Space Science library for Python - contains superposed epoch classes, drift shell tracing, access to magnetic fiel
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PostuRanalyzeR
Dieses Projekt versucht, aus den Oszillationskurven eines an einer schwingenden Plattform befestigten 3D-Beschleunigungssensors charakteristische Kennwerte zu
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phpMedErr
Originally planned as a medication error reporting system, this space is being used to house projects that may of be of some value to those in the healthcare c
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TIGR Spotfinder
Spotfinder is an image processing software tool for microarray image analisys. It is written on C++ with QT GUI toolkit and runs on Windows, X11, and Mac OSX.
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Physics 3d Simulations
The Physics 3d Simulations Project, intends to be a educational tool, for helping science students understanding physics concepts of Classical Mechanics, Eletr
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SMMP
SMMP (Simple Molecular Mechanics for Proteins) is a program library for protein simulations with an emphasis on advanced Monte Carlo algorithms. It includes va
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Nifty Sim
Nifty Sim is a high-performance nonlinear finite element solver, developed at University College London. A key feature is the option of GPU-based execution, wh
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Meredys
Meredys (MEsoscopic REaction DYnamics Simulator) is a particle based stochastic simulation software designed to model and simulate reaction-diffusion systems.
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OpenQVis
High quality volume graphics on consumer PC hardware. This GPL project is a graphics application for the visualization of 3D volume data on uniform rectilinear
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TORCH
TORCH is a web enabled electronic health record (EHR) application. TORCH is usable in single practitioner offices and scalable up to multi-site practices. Audi
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glare
GLARE is a library and a software for product based optimization of reagent lists in the context of a chemical combinatorial library design. Large virtual comb
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CCA-fMRI
CCA-fMRI is a SPM-toolbox (http: //www.fil.ion.ucl.ac.uk/spm/) for detecting brain activity pattern using functional magnetic resonance imaging (fMRI) in combi
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SLD Calculator
A GUI to calculate chemical compound characteristics along with their Neutron and X-Ray Scattering Length Densities. Comes as standalone package for Windows, L
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Protein Geometry Database
The Protein Geometry Database hosts the development code for a flexible database for searching protein geometry, as well as a library for accessing this data f
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PyMOL Plugins
PyMOL Plugins aims to provide many plugins for the PyMOL software. You can find further informations about PyMOL on this website: http: //www.pymol.org/. Audie
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LanQ Quantum Programming Language
LanQ is a research project in the field of quantum computer science - a quantum programming language designed to support multiprocess execution. Audience: Deve
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Chemical Structures
The Chemical Structures Project is a set of 3D structures of molecules in CML format. Each file contains also some physical properties, which can be access usi
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JStega
JStega is a steganography tool written in Java. Steganography is the art and science of writing hidden messages in such a way that no one apart from the intend
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OF - Opposite Face
A topological data structure to handle 2D, surfaces and 3D simplicial meshes. This data structure is implemented in C++ using templates. It is based on Corner-
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phpClinic
A web-based maintenance management system for clinics and hospitals. Allows to store equipment information, customer complaints and issue workorder sheets. Use
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ClusterAlign
Tracking markers shown faintly in projections of rotating rigid body with translational jitter based on uniqueness of structures. Features: Learning marker tem
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The AL2 Language
Al2 is a language, close to C++ and Java, designed for use in mathematics and science, but is procedural unlike Mathematica and Maple. Like C++, class operator
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CMR-rep
Research code for continuous 3D medial modeling targeted towards anatomical objects. Includes an OpenGL viewer and individual and population-based model fittin
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Web graph compression
This project contains the implementation of web graph compression algorithms developed in Technical University of ?�d? by Institute of Applied Computer Science
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vuVolume
vuVolume is a framework for volume rendering algorithms in C++. When creating a new rendering method in vuVolume it is possible to just concentrate on the actu
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Chemotaxis and Migration Tool
This tool is a free software tool for analyzing chemotactical or migration data. Programming Language: C++. Categories: Molecular Science, Visualization, Medic
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SciBearSpace
Open Source Clinical Information Management System. From research to laboratory. Gathering / storing of analytical data within an SQL database. Audience: Healt
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Chemical Descriptors Library (CDL)
CDL provides a generic C++ framework to write algorithms for the calculation of molecular descriptors. CDL provides efficient substructure search, fingerprints
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RMol : SD/Molfile information in R
RMol is an R script with a collection of functions to link information of SD/Molfile structure databases with powerful graph analysis packages in R. Audience:
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Bowtie
Bowtie, an ultrafast, memory-efficient short read aligner for short DNA sequences (reads) from next-gen sequencers. Please cite: Langmead B, et al. Ultrafast a
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niftilib
niftilib is a collection of i/o routines for the nifti1 neuroimage data format. C (nifticlib), Java (niftijlib), Matlab (niftimatlib), and Python (pynifti) cod
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j-Algo
j-Algo is an algorithm visualization tool, especially useful for students and lecturers of computer science. It is written in Java and platform independent. j-
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Voxel Surface
"Voxel Surface" is a MATLAB program that creates exact surfaces from 3-D voxel data such as from MRI and CT Scan. It replaces MATLAB isosurface, isocap
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mzSquash
mzSquash is a compression tool for mzML files, an XML-based standard developed by HUPO PSI (http: //www.psidev.info) for spectrometer output. All development h
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MORPHE
MORphological PHenotype Extraction (MORPHE) is a suite of automated image processing, visualization, and classification algorithms to facilitate the analysis o
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XRaySim
Open-source CT/ Radiography simulation package. XRaySim works seamlessly with commercial CAD packages and performs highly detailed scan simulations, with virtu
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OpenEarthTools
Engineering, analysis and computing tools for marine and coastal science and technology. Audience: Science/Research. Programming Language: Fortran, MATLAB, Pyt
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OpenEMed
OpenEMed is a distributed healthcare and medical information framework based on open standards including those of HL7 and the healthcare taskforce of the OMG.
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epiPATH
epiPATH is a platform to store and analyze evolutionary, population and epidemiological data from infectious diseases. It is designed to aid users in daily wor
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Wattos
Wattos is a collection of mostly Java programs for Structural Biology and NMR Spectroscopy. It's programs analyze, annotate, parse, archive, and disseminat
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RasMol
The SourceForge OpenRasMol project is an adjunct to the RasMol and OpenrasMol project at http: //rasmol.org. It is hoped that the SourceForge OpenRasMol projec
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4DiCeS
4-Dimensional Cell Simulator (4DiCeS) is a framework on hybrid (stochastic and deterministic) modeling and simulation of (whole) cell environments in 4D. The f
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OpenMedic
OpenMedic is a set of open source software and hardware building blocks written in C# for building computer-based medical instrumentation and controls using th
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DIOWave Visual Storage
DIOWave Visual Storage is a Web server which displays DICOM images. The look and feel of the Web pages are similar to imaging workstations. Audience: Healthcar
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Atomic-Clusters
This project is intended to perform Monte-Carlo-Simulations to calculate small clusters (2 to 13 atoms) of the rare gas "argon". Audience: Science/Rese
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Porcupine 2
Porcupine2 is a small wearable sensory unit for logging motion data and doing low-level activity recognition. The project includes electronic schematics for th
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BODE: Bioinformatics ODds and Ends
A collection of bioinformatics-related software created by members of Cancer Research UK (possibly among others). Audience: Science/Research. User interface: C
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