dymmm

We have hosted the application dymmm in order to run this application in our online workstations with Wine or directly.

Quick description about dymmm:

The Dynamic Multispecies Metabolic Modeling (DyMMM [d?m]) framework is a mathematical modeling tool that integrates multiple constraint-based metabolic models into a single dynamic community metabolic model. The DyMMM framework was formerly known as the DMMM framework.

Please use the following citation for bibliographical purposes:
Zhuang, K., Izallalen, M., Mouser, P., Richter, H., Risso, C., Mahadevan, R., & Lovley, D. R. (2011). Genome-scale dynamic modeling of the competition between Rhodoferax and Geobacter in anoxic subsurface environments. The ISME journal.

Zhuang, K., Ma, E., Lovley, D. R., & Mahadevan, R. (2012). The design of long-term effective uranium bioremediation strategy using a community metabolic model. Biotechnology and Bioengineering.

Features:

• dynamic community metabolic modeling
• cobra-toolbox integration
• matlab integration

Audience: Science/Research, Engineering.

Programming Language: MATLAB.
Categories: