xi spectrum viewer to run in windows online over linux online

We have hosted the application xi spectrum viewer to run in windows online over linux online in order to run this application in our online workstations with Wine or directly.

Quick description about xi spectrum viewer to run in windows online over linux online:

To overcome current limitations in published MS data accessibility, we introduce a browser-based spectrum viewer that aims to allow exploration of alternative interpretations for MS spectra and additionally: can be operated by non-specialists, is open source, can be integrated into other software, gives appropriate publication-quality output.

Spectrum Viewer is implemented totally on the client side using XHTML for menus and dialogs, SVG for spectrum and peptide display, and Javascript to drive functionality. It comprises 3 parts: (1) the core Spectrum Viewer displays peptide-spectrum matches and implements zooming, mouse-over peaks to highlight matching parts of peptide, mouse-over parts of peptide to highlight matching peaks, export SVG, and API; (2) the Auxiliary Annotator matches peptide to spectrum for given parameters and prepares the data for the Viewer; (3) these reside on a web page that provides the user control over peptides, spectra and other parameters e.g. linker mass.

Features:

• Import peaklist
• Specify a single peptide, a peptide pair, or a cross-linked peptide pair with linker positions
• Modify various parameters, e.g. modifications
• Perform annotation of spectrum based on specified parameters
• Zoom
• Hover on peaks to highlight sequence
• Hover on sequence to highlight peaks
• Export SVG
• Successfully tested in Firefox, Chrome, Safari, Internet Explorer.

Audience: Science/Research, Developers, End Users/Desktop, Testers.
User interface: Web-based.
Programming Language: JavaScript.

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