virus online with Winfy

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Quick description about virus:

Stochastic simulation model of poliovirus Sabin-to-Mahoney genetic state transition (C++ code). Models genotypes, virus populations, and quasispecies cloud. Simulates replication error and copy-choice recombination. Various parameters guiding the model are user-specified. Python code post-processes simulation output to produce report files.

Features:

• Simulates Picornavirus replication error and copy-choice recombination
• Represents genotypes, cell populations, and quasispecies cloud
• Allows user control of parameters: MOI, replication error rate, recombination rate, generational growth rate, burst size, number of passages, number of cells, fitness acceleration, Mahoney mutational synergy
• Reports population diversity, average fitness, neurovirulence, Mahoney resemblence

Audience: Science/Research, Education, Advanced End Users, Developers.

Programming Language: Python, C++.
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