We have hosted the application parsec pattern search context to run in windows online over linux online in order to run this application in our online workstations with Wine or directly.


Quick description about parsec pattern search context to run in windows online over linux online:

The characterization of genomic sites is a major challenge in the understanding and exploitation of next generation sequencing data. Most genomic sites are represented by short, degenerated motifs with a scattered distribution and sometimes with biological function (ex: regulation of gene expression, splicing patterns or epigenetics signals). These motifs are associated with a huge amount of noise and thus, the development of a computational platform for accurate detection of genomic sites requires the integration of various large-scale biological data in order to filter out false positives.

PARSEC represents an intuitive, modular (easily extensible) and all-in-one solution for the efficient integration of lots of diverse genomic information in order to perform nonlinear localization and characterization of biological sites in a user-friendly environment.

See the wiki for hardware requirements and supported browsers.

Audience: Science/Research.
User interface: Web-based.
Programming Language: C++, Java.
Database Environment: JDBC, MySQL, PostgreSQL (pgsql).
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