meraculous 2d to run in linux online online with Winfy

We have hosted the application meraculous 2d to run in linux online in order to run this application in our online workstations with Wine or directly.

Quick description about meraculous 2d to run in linux online:

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IMPORTANT: Meraculous-2D has been superseded by HipMer assembler. Get it from here: https: //sourceforge.net/projects/hipmer/
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Meraculous-2D is a whole genome assembler for NGS reads (Illumina) that is capable of assembling large, diploid genomes with modest computational requirements. Features include:

- Efficient k-mer counting and deBruijn graph traversal
- Two modes of handling of diploid allelic variation
- Improved scaffolding that produces more complete assemblies without compromising scaffolding accuracy.

The assembly is driven by a perl pipeline which performs data fragmentation and load balancing, as well as submission and monitoring of multiple task arrays on a GE/SLURM-type cluster or a standalone multi-core server.

Manuscripts in submission:
https: //arxiv.org/abs/1703.09852
https: //arxiv.org/abs/1608

Features:

• Eukaryotic Genome Assembly
• Specialized modes for high- and low-heterozygosity genomesembly
• Built-in distributed execution
• Efficient k-mer space operations
• Single-server and cluster-ready deployment (AWS-ready)

Audience: Science/Research.
User interface: Command-line.
Programming Language: Perl, C++.

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