grinder to run in linux online online with Winfy

We have hosted the application grinder to run in linux online in order to run this application in our online workstations with Wine or directly.

Quick description about grinder to run in linux online:

Grinder is a versatile open-source bioinformatic tool to create simulated omic shotgun and amplicon sequence libraries for all main sequencing platforms.

Features:

• shotgun or amplicon (e.g. 16S rRNA) read libraries
• omics support to generate genomic, transcriptomic, proteomic, metagenomic, metatranscriptomic or metaproteomic datasets
• arbitrary read length distribution and number of reads
• simulation of PCR and sequencing errors (chimeras, point mutations, homopolymers)
• support for paired-end (mate pair) datasets
• specific rank-abundance settings or manually given abundance for each genome, gene or protein
• creation of datasets with a given richness (alpha diversity)
• related datasets can share a variable number of genomes (beta diversity)
• modeling of the bias created by varying genome lengths or gene copy number
• profile mechanism to store preferred options
• available to biologists or power users through multiple interfaces: GUI, CLI and API

Audience: Science/Research.
User interface: Console/Terminal.
Programming Language: Perl.

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