genoo hts

We have hosted the application genoo hts in order to run this application in our online workstations with Wine or directly.

Quick description about genoo hts:

GenOO-HTS [jee-noo] is an open-source; object-oriented Perl framework specifically developed for the design of High Throughput Sequencing (HTS) analysis tools. The primary aim of GenOO-HTS is to make simple HTS analyses easy and complicated analyses possible. GenOO-HTS models biological entities into Perl objects and provides relevant attributes and methods that allow for the manipulation of high throughput sequencing data. Using GenOO-HTS as a core development module reduces the overhead and complexity of managing the data and the biological entities at hand. GenOO-HTS has been designed to be flexible, easily extendable with modular structure and minimal requirements for external tools and libraries.

Features:

• Organize biological entities as perl objects (genomic regions, genes, transcripts, introns/exons, etc)
• Organize sequencing entities as perl objects/attributes (sequencing reads, alignments, etc)
• Make I/O from widely used file formats easy (SAM, BED, FASTA, FASTQ)
• Be consistent and easily extendable

Audience: Science/Research, Developers.

Programming Language: Perl.
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