genomerunner to run in windows online over linux online

We have hosted the application genomerunner to run in windows online over linux online in order to run this application in our online workstations with Wine or directly.

Quick description about genomerunner to run in windows online over linux online:

Note: This version requires additional SQLite database files. Contact the developers to obtain them.

Use http: //www.integrativegenomics.org/ for the latest data and analyses.

GenomeRunner is a tool for automating genome exploration. It performs annotation and enrichment analyses of user-provided genomic regions (SNPs, ChIP-seq binding sites etc.) against >6,000 (human genome) epigenomic features available from the UCSC genome browser.

Input - any genome-wide data data in .bed format (tab-delimited text file with chrom, chromStart, chromEnd).

Annotation analysis output - detailed annotation of each genomic region in input data. Used to prioritize individual genomic regions by the total number of epigenomic features they co-localize with.

Enrichment analysis output - p-values of statistically significant co-localizations of input genome-wide data with genome annotation features selected for the analysis. Used to prioritize epigenomic features associated with user data.

Features:

• Analysis of genomic regions (ChIP-seq, RNA-seq, DNA methylation, SNPs/CNVs etc.)
• ENCODE data
• Annotation and Enrichment analyses
• BED file format (chrom, chromStart, chromEnd)
• Video overview (http: //youtu.be/v9p9FClrqXU)

Audience: Science/Research, End Users/Desktop.
User interface: Project is a user interface (UI) system.
Programming Language: Visual Basic .NET.
Database Environment: SQL-based.
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