fishingcnv to run in windows online over linux online

We have hosted the application fishingcnv to run in windows online over linux online in order to run this application in our online workstations with Wine or directly.

Quick description about fishingcnv to run in windows online over linux online:

FishingCNV, a software tool developed at McGill University, is a tool for comprehensive analysis of rare copy number variations in high-throughput exome sequencing data. The inputs are standard coverage files produced by Genome Analysis ToolKit (GATK), and the output is a file containing putative CNVs.

The program comes in 2 different releases
* GUI version (FishingCNV_X.X.X.zip)
* Command line version (FishingCNV_X.X_pipeline)

Browse through our files to find the different releases.

Features:

• Graphical User Interface
• CNV analysis for matched test/control (e.g. cancer/tumor)
• CNV analysis for non-matched samples
• Batch-effect removal within the control set
• Tab-delimited output can be viewed in Excel
• Additional output file can be visualized in IGV
• Distribution plots and outlier plots for each chromosome

Audience: Science/Research, Education.
User interface: Java Swing.
Programming Language: Java, S/R.

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