covidex online with Winfy

We have hosted the application covidex in order to run this application in our online workstations with Wine or directly.

Quick description about covidex:

Viral subtypes or clades represent clusters among isolates from the global population of a defined species. Subtypification is relevant for studies on virus epidemiology, evolution and pathogenesis. In this sense, Covidex was developed as an open source alignment-free machine learning subtyping tool. It is a shiny app that allows fast and accurate classification of viral genomes in pre-defined clusters. If more than 1000 sequences are loaded the tool will run in multithread mode. Capable of classifying 16000 genome sequences in less than a minute (AMD Ryzen 7 1700 8-core Processor 3 GHz)
For a Web-based version of the app (only for small datasets: 100 seqs max) please go to
http: //covidex.unlu.edu.ar
If you use Covidex please consider citing the following preprint:
https: //biorxiv.org/cgi/content/short/2020.08.21.261347v1
If you think my work is useful you can buy me a coffee! https: //www.buymeacoffee.com/mcacciabue.

Features:

• Subtyping of sequences
• User-friendly interface
• Summary plots
• Portable version for Windows (No installation needed)
• Multithread mode

Audience: Science/Research, End Users/Desktop.

Programming Language: R.

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