123ngs online with Winfy
We have hosted the application 123ngs in order to run this application in our online workstations with Wine or directly.
Quick description about 123ngs:
123Fastq, as the first member of 123NGS family, performs all the pre-processes around next-generation sequencing reads (FASTQ files) easier than ever in the field of open source tools.�Download quick user manual:
http: //bit.ly/36uoA2C
This work has been done under the supervision of
Dr.Javad Zahiri, Bioinformatics and Computational Omics Lab (BioCOOL)
and�
Dr.Masoud Garshasbi, Department of Medical Genetics, Faculty of Medical Sciences, Tarbiat Modares University, Tehran, Iran.
Features:
- Next generation sequencing reads quality check
- Quality check of paired-end reads
- Flexible trimmer
- Trim recommendations based on quality check results
- Adapter decontamination by two approaches
- Fast5 to FASTQ conversion
- SAM/BAM to FASTQ conversion
- Demultiplexing FASTQ reads
- Cross platform (unix, windows)
- Written in java
User interface: Java Swing.
Programming Language: Java.
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